Breakfast Egg Muffins

Featured in: Everyday Meal Ideas

Whisk together six eggs with milk, shredded cheddar, diced bell peppers, onions, and crumbled bacon seasoned with salt, pepper, garlic powder, and paprika. Pour into a greased muffin tin and bake at 350°F for 18–20 minutes until set and golden. Let cool briefly before removing from the tin. These handheld breakfasts keep in the refrigerator for five days or freeze well for later. Customize with sausage, ham, spinach, or different cheeses to suit your taste.

Updated on Mon, 02 Feb 2026 12:22:00 GMT
Golden-brown Breakfast Egg Muffins with melted cheddar cheese and crumbled bacon peeking out of a muffin tin. Pin it
Golden-brown Breakfast Egg Muffins with melted cheddar cheese and crumbled bacon peeking out of a muffin tin. | simpleilem.com

One Sunday morning, I stood in front of the fridge staring at a carton of eggs and leftover bacon, trying to figure out how to feed four hungry people without spending an hour at the stove. I grabbed a muffin tin on a whim and started whisking. Twenty minutes later, golden egg muffins emerged from the oven, and my kitchen smelled like a diner. Everyone grabbed two, still warm, and I realized I'd stumbled onto something that would change our weekday mornings forever.

I started bringing these to early meetings, wrapped in foil and still faintly warm. My coworker Amanda asked for the recipe after her third muffin, and I watched her scribble notes on the back of an agenda. A week later she texted me a photo of her own batch, studded with spinach and feta. That's when I understood these muffins weren't just convenient, they were a template for whatever you had on hand and whatever your morning needed.

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Ingredients

  • Large eggs: The foundation of the muffin, whisked until slightly frothy so they puff up beautifully and hold all the mix-ins without falling apart.
  • Milk: Adds a creamy, custardy texture that keeps the muffins tender instead of rubbery, and I've learned that whole milk works best.
  • Shredded cheddar cheese: Melts into golden pockets throughout each muffin and creates those irresistible crispy edges when it hits the hot tin.
  • Diced bell peppers: Bring color, a hint of sweetness, and a slight crunch that balances the richness of eggs and cheese.
  • Diced onions: Soften as they bake and add a savory depth that makes these taste like something you ordered, not something you threw together.
  • Cooked and crumbled bacon: Provides smoky, salty bursts in every bite, though sausage or even diced ham work just as well if that's what you have.
  • Salt, black pepper, garlic powder, and paprika: Simple seasonings that wake up the eggs and tie all the flavors together without overpowering the vegetables or cheese.
  • Cooking spray or olive oil: A light coat on the muffin tin prevents sticking and ensures you can pop these out cleanly every single time.

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Instructions

Preheat and Prep Your Tin:
Set your oven to 350°F and give it time to fully heat while you grease every cup of a standard 12-cup muffin tin. Don't skip the greasing, even if your tin is nonstick, because egg can be stubborn.
Whisk the Base:
In a large bowl, whisk the eggs and milk together until the mixture is smooth and a little frothy on top. This aeration helps the muffins rise and stay light.
Fold in the Fillings:
Stir in the cheddar, bell peppers, onions, bacon, and all your seasonings until everything is evenly distributed. You want each muffin to have a bit of everything.
Fill the Cups:
Pour the mixture into each muffin cup, filling them about two-thirds full to leave room for the eggs to puff. I use a liquid measuring cup with a spout to avoid spills.
Bake Until Golden:
Slide the tin into the oven and bake for 18 to 20 minutes, until the tops are set and lightly golden. A toothpick poked in the center should come out clean, not wet.
Cool and Release:
Let the muffins rest in the tin for 5 minutes so they firm up, then run a butter knife around the edges if needed and lift them out. Serve them warm or let them cool completely for storage.
Freshly baked Breakfast Egg Muffins featuring diced bell peppers and onions, served warm on a rustic plate. Pin it
Freshly baked Breakfast Egg Muffins featuring diced bell peppers and onions, served warm on a rustic plate. | simpleilem.com

The first time I reheated one of these a few days later, I was skeptical it would taste as good as fresh. But thirty seconds in the microwave brought back that fluffy texture and melty cheese, and I ate it standing at the counter, grateful I'd made extra. It felt like having a secret stash of homemade comfort, ready whenever I needed it.

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Make-Ahead Magic

I bake a full batch every Sunday night and store them in a glass container in the fridge, stacked with parchment between the layers. On weekday mornings, I grab two, microwave them for about 30 seconds, and I'm out the door with a real breakfast instead of a granola bar. They stay fresh and flavorful for up to five days, and I've even frozen them in individual baggies for longer storage.

Swapping and Personalizing

Once you get the base ratio down, these muffins become a canvas for whatever's in your fridge. I've made them with diced ham and Swiss, crumbled sausage and pepper jack, and even a vegetarian version loaded with spinach, mushrooms, and feta. The key is keeping the total volume of add-ins roughly the same so the eggs still set properly.

Serving and Storing

I love these plain and warm, but they're even better with a drizzle of hot sauce or a spoonful of salsa on the side. If you're serving a crowd, arrange them on a platter with a bowl of sour cream and some fresh herbs scattered on top. For freezing, wrap each muffin individually in plastic wrap, then toss them all in a freezer bag.

  • Thaw frozen muffins overnight in the fridge for the best texture when reheated.
  • Pop cold muffins in a toaster oven for a few minutes to crisp up the edges if you like a little crunch.
  • Always let them cool completely before sealing in a container to avoid sogginess from trapped steam.
Savory gluten-free Breakfast Egg Muffins, golden and fluffy, ready to grab for a quick on-the-go breakfast. Pin it
Savory gluten-free Breakfast Egg Muffins, golden and fluffy, ready to grab for a quick on-the-go breakfast. | simpleilem.com

These muffins have become my answer to chaotic mornings and lazy weekends alike. I hope they bring you the same quiet joy of knowing breakfast is already handled, no matter what the day throws at you.

Questions & Answers

Can I make these egg muffins ahead of time?

Yes, these are perfect for meal prep. Let them cool completely after baking, then store in an airtight container in the refrigerator for up to five days. Reheat individual portions in the microwave for 30–45 seconds before serving.

How do I prevent the muffins from sticking to the tin?

Generously grease each muffin cup with cooking spray or olive oil before pouring in the egg mixture. After baking, let them cool for five minutes, then carefully run a knife around the edges to loosen before removing.

What vegetables work well in these muffins?

Bell peppers and onions are classic choices, but you can also add spinach, mushrooms, diced tomatoes, or zucchini. Sauté watery vegetables like mushrooms or spinach briefly before adding to prevent excess moisture.

Can I freeze these breakfast muffins?

Absolutely. Cool completely, then place in a freezer-safe bag or container. They'll keep for up to three months. Thaw overnight in the refrigerator and reheat in the microwave or oven at 350°F for about 10 minutes.

How can I make these vegetarian?

Simply omit the bacon and add extra vegetables like spinach, mushrooms, or diced tomatoes. You can also incorporate vegetarian proteins such as black beans, crumbled tofu, or plant-based sausage crumbles.

Why did my muffins deflate after baking?

Slight deflating is normal as eggs cool. To minimize this, avoid overmixing the batter and don't overbake. Remove from the oven when they're just set and lightly golden, then let them cool in the tin for five minutes to stabilize the structure.

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Breakfast Egg Muffins

Protein-packed muffins with eggs, bacon, cheddar and veggies ready in 35 minutes.

Prep Time
10 mins
Cook Duration
20 mins
Overall Time
30 mins
Created by Ellis Carlson


Skill Level Easy

Cuisine American

Makes 6 Portions

Diet Info No Gluten, Reduced Carb

What You'll Need

Eggs & Dairy

01 6 large eggs
02 1/2 cup whole milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers (red, green, or yellow)
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil

How-To Steps

Step 01

Preheat Oven: Preheat oven to 350°F.

Step 02

Prepare Muffin Tin: Grease a standard 12-cup muffin tin with cooking spray or olive oil.

Step 03

Combine Wet Ingredients: In a large mixing bowl, whisk together eggs and milk until well combined and slightly frothy.

Step 04

Mix in Remaining Ingredients: Stir in cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika until evenly mixed.

Step 05

Fill Muffin Cups: Pour the mixture into the prepared muffin tin, filling each cup approximately two-thirds full.

Step 06

Bake: Bake for 18 to 20 minutes, or until muffins are set and lightly golden. A toothpick inserted in the center should come out clean.

Step 07

Cool and Remove: Remove from oven and let cool for 5 minutes. Carefully loosen muffins with a knife if needed and remove from tin.

Step 08

Serve or Store: Serve warm, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in the microwave before serving.

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Tools Needed

  • 12-cup muffin tin
  • Large mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergens

Review each food item for allergens and speak with a healthcare expert if you're unsure.
  • Contains eggs and dairy (milk)
  • May contain pork depending on protein choice
  • Gluten-free as written; verify labels on sausage and other add-ins

Nutrition per Serving

Details here are for information and don't replace guidance from your healthcare provider.
  • Energy: 150
  • Total Fat: 10 g
  • Net Carbs: 2 g
  • Proteins: 11 g

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